Metagenomic analysis

Webservers:

AmphoraNet: The webserver version of the AMPHORA2 suite

AmphoraVizu: Visualizes the results of AMPHORA, AMPHORA2 and AmphoraNet

METAHMM: HMM-based gene identification in metagenomes

 

Publications:

Csaba Kerepesi, Vince Grolmusz: Evaluating the Quantitative Capabilities of Metagenomic Analysis Software, Current Microbiology, Vol. 72. No. 5. pp. 612-616 (2016)

Csaba Kerepesi,  Vince Grolmusz: The “Giant Virus Finder” Discovers an Abundance of Giant Viruses in the Antarctic Dry Valleys,  Archives of Virology (2017); also in  arXiv preprint 1503.05575 (2015)

Csaba Kerepesi, Balázs Szalkai, Vince Grolmusz: Visual analysis of the quantitative composition of metagenomic communities: the AmphoraVizu webserver; Microbial Ecology, Vol. 69 (2015) pp. 695-697,

Csaba Kerepesi, Vince Grolmusz: Giant viruses of the Kutch desert; Archives of Virology,  Vol. 161 (2016), No.3 pp.721-724,      Preprint version: arXiv 1410:1278, October 2014.

Balázs Szalkai, Ildikó Scheer, Kinga Nagy, Beáta G Vértessy, Vince Grolmusz, The Metagenomic Telescope, PLoS One, Vol. 9, No. 7, e101605, July 2014,  http://dx.doi.org/10.1371/journal.pone.0101605

Csaba Kerepesi, Dániel Bánky, Vince Grolmusz: AmphoraNet: The Webserver Implementation of the AMPHORA2 Metagenomic Workflow Suite, Gene, 2014, Vol. 533 No. 2. pp. 538-540; http://dx.doi.org/10.1016/j.gene.2013.10.015