Metagenomic analysis

Webservers:

AmphoraNet: The webserver version of the AMPHORA2 suite

AmphoraVizu: Visualizes the results of AMPHORA, AMPHORA2 and AmphoraNet

METAHMM: HMM-based gene identification in metagenomes

 

Publications:

Csaba Kerepesi, Vince Grolmusz: Evaluating the Quantitative Capabilities of Metagenomic Analysis Software, Current Microbiology, to appear

Csaba Kerepesi,  Vince Grolmusz: The “Giant Virus Finder” Discovers an Abundance of Giant Viruses in the Antarctic Dry Valleys,  arXiv preprint 1503.05575 (2015)

Csaba Kerepesi, Balázs Szalkai, Vince Grolmusz: Visual analysis of the quantitative composition of metagenomic communities: the AmphoraVizu webserver; Microbial Ecology. 2014 Oct 10. [Epub ahead of print]

Csaba Kerepesi, Vince Grolmusz: Giant Viruses of the Kutch Desert, Archives of Virology, First online: 14 December 2015, doi:   http://dx.doi.org/10.​1007/​s00705-015-2720-8

Balázs Szalkai, Ildikó Scheer, Kinga Nagy, Beáta G Vértessy, Vince Grolmusz, The Metagenomic Telescope, PLoS One, Vol. 9, No. 7, e101605, July 2014,  http://dx.doi.org/10.1371/journal.pone.0101605

Csaba Kerepesi, Dániel Bánky, Vince Grolmusz: AmphoraNet: The Webserver Implementation of the AMPHORA2 Metagenomic Workflow Suite, Gene, 2014, Vol. 533 No. 2. pp. 538-540; http://dx.doi.org/10.1016/j.gene.2013.10.015